Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs79327308 chr7:1108141 A/C 0.000262 173 25.87 24.95 49.58 KM Plot
PCPG rs79330829 chr2:176213974 G/T 0.000115 178 25.28 28.95 6.62 KM Plot
PCPG rs79379180 chr7:36156147 C/T 0.000433 178 25.77 24.5 14.37 KM Plot
PCPG rs79407761 chr7:43028551 C/T 1.74E-8 178 25 25.97 8.22 KM Plot
PCPG rs79432600 chr16:90080947 A/G 1.63E-8 170 25.92 20.28 6.62 KM Plot
PCPG rs79436528 chr12:56686997 C/T 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs79441750 chr16:89952397 C/T 0.000162 172 26.27 21.5 36.37 KM Plot
PCPG rs79447163 chr2:24323107 G/A 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs79465400 chr16:71721907 G/T 8.79E-6 176 23.83 31.48 14.5 KM Plot
PCPG rs7947946 chr11:103965819 A/G 4.38E-11 178 10.3 16.87 25.87 KM Plot
PCPG rs79502578 chr12:131365616 T/G 1.03E-7 175 24.62 32.32 19.87 KM Plot
PCPG rs79506905 chr5:171530675 G/A 0.000114 177 25.87 22.3 17.12 KM Plot
PCPG rs7951754 chr11:103967328 T/C 6.89E-11 175 25.87 16.87 10.3 KM Plot
PCPG rs7951767 chr11:103967347 T/C 6.89E-11 175 25.87 16.87 10.3 KM Plot
PCPG rs79560601 chr8:53853614 C/T 5.59E-5 171 24.47 27.2 20 KM Plot